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36392 commits

Author SHA1 Message Date
guy fleury iteriteka
660aa5d9f8
gnu: libmatemixer: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatemixer): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
541dfa45da
gnu: mate-settings-daemon: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-settings-daemon): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
bc96f8c4a7
gnu: mate-session-manager: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-session-manager): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:26:00 +02:00
guy fleury iteriteka
27d4e820d1
gnu: mate-terminal: Update to 1.22.0 
* gnu/packages/mate.scm (mate-terminal): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
595abe8688
gnu: libmatewether: Update to 1.22.0. 
* gnu/packages/mate.scm (libmatewether): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
2dc975d7c0
gnu: mate-desktop: Update to 1.22.2. 
* gnu/packages/mate.scm (mate-desktop): Update to 1.22.0.
[inputs]: Add iso-codes.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
b465500686
gnu: mate-themes: Update to 3.22.19. 
* gnu/packages/mate.scm (mate-themes): Update to 3.22.19.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
80e8305146
gnu: mate-icon-theme: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.20.3.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:59 +02:00
guy fleury iteriteka
8b493c7cf0
gnu: mate-common: Update to 1.22.0. 
* gnu/packages/mate.scm (mate-common): Update to 1.22.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-03 15:25:57 +02:00
Ricardo Wurmus
44e06f9cf3
gnu: Add brlaser. 
* gnu/packages/printers.scm (brlaser): New variable.
 2019-04-02 22:04:08 +02:00
Kei Kebreau
932d6e276b
gnu: wxmaxima: Update to 19.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
 2019-04-02 14:45:22 -04:00
Leo Famulari
a6f9f18c7e
gnu: livemedia-utils: Update to 2019.03.06. 
* gnu/packages/video.scm (livemedia-utils): Update to 2019-03-06.
[source]: Remove snippet.
 2019-04-02 14:44:14 -04:00
Leo Famulari
295197500f
gnu: Syncthing: Update to 1.1.1. 
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.1.
 2019-04-02 13:07:03 -04:00
Leo Famulari
9c1b4316dc
gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes]. 
Fixes a vulnerability in 'golang.org/x/crypto/salsa20' where, if more than 256
GiB of keystream is generated, or if the counter otherwise grows greater than 32
bits, the amd64 implementation will first generate incorrect output, and then
cycle back to previously generated keystream.

https://go.googlesource.com/crypto/+/b7391e95e576cacdcdd422573063bc057239113d

* gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519,
go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-sha3, go-golang-org-x-crypto-ssh-terminal): Update to
0.0.0-3.b7391e9.
(go-golang-org-x-crypto-blake2s)[propagated-inputs]: Add
go-golang-org-x-sys-cpu.
(go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ssh-terminal):
Inherit from go-golang-org-x-crypto-bcrypt.
 2019-04-02 13:07:03 -04:00
Leo Famulari
4a136536e8
gnu: Add go-golang-org-x-sys-cpu. 
* gnu/packages/golang.scm (go-golang-org-x-sys-cpu): New variable.
 2019-04-02 13:07:03 -04:00
Ludovic Courtès
af76c020bf
linux-container: Make the guest UID and GID a parameter. 
* gnu/build/linux-container.scm (initialize-user-namespace): Add
 #:guest-uid and #:guest-gid parameters and honor them.
(run-container): Likewise.
(call-with-container): Likewise.
* tests/containers.scm ("call-with-container, user namespace, guest UID/GID"):
New test.
 2019-04-02 18:15:37 +02:00
Ricardo Wurmus
cbe40b8b24
gnu: pigx-scrnaseq: Use older loompy. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
python-loompy with python-loompy-for-pigx-scrnaseq.
 2019-04-02 16:11:23 +02:00
Ricardo Wurmus
dc112a0fe2
gnu: Add python-loompy-for-pigx-scrnaseq. 
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
 2019-04-02 16:11:12 +02:00
Ricardo Wurmus
82cc117450
gnu: pigx-chipseq: Update to 0.0.40. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.40.
 2019-04-02 15:53:23 +02:00
Ricardo Wurmus
b4a33870f6
gnu: python-scanpy: Add python-louvain to inputs. 
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Sort
inputs and add python-louvain.
[arguments]: Do not delete test that depends on louvain.
 2019-04-02 15:11:45 +02:00
Ricardo Wurmus
6ee48091a4
gnu: Add python-louvain. 
* gnu/packages/graph.scm (python-louvain): New variable.
 2019-04-02 15:11:45 +02:00
Rutger Helling
ba907ae362
gnu: faudio: Update to 19.04. 
* gnu/packages/audio.scm (faudio): Update to 19.04.
 2019-04-02 11:30:05 +02:00
Clément Lassieur
c97ad2fd8b
gnu: Add emacs-evil-numbers. 
* gnu/packages/emacs-xyz.scm (emacs-evil-numbers): New variable.
 2019-04-02 10:55:07 +02:00
Ludovic Courtès
d6fda4d3d1
gnu: gnome-shell: Add dependency on libgnomekbd. 
This fixes the "Show keyboard layout" button in the keyboard layout
switcher.

* gnu/packages/gnome.scm (gnome-shell)[arguments]: In
'record-absolute-file-names' phase, record file name of
'gkbd-keyboard-display'.
[inputs]: Add LIBGNOMEKBD.
 2019-04-01 23:21:02 +02:00
Ludovic Courtès
2472cdec25
gnu: gnome-shell: Store absolute file name of 'ibus-daemon'. 
* gnu/packages/gnome.scm (gnome-shell)[arguments]: Add
'record-absolute-file-names' phase.
 2019-04-01 23:20:56 +02:00
Leo Famulari
0e55864036
gnu: go-github-com-burntsushi-toml: Update to 0.3.1. 
* gnu/packages/golang.scm (go-github-com-burntsushi-toml): Update to 0.3.1.
 2019-04-01 16:07:21 -04:00
Arun Isaac
413f61265e
gnu: Add mlucas. 
* gnu/packages/maths.scm (mlucas): New variable.
 2019-04-01 17:07:31 +05:30
Rutger Helling
cce9e3792a
gnu: flatpak: Update to 1.2.4 [fixes CVE-2019-10063]. 
* gnu/packages/package-management.scm (flatpak): Update to 1.2.4 [fixes
CVE-2019-10063].
 2019-04-01 10:05:58 +02:00
Rutger Helling
6bc30a571c
gnu: openmw: Update to 0.45.0. 
* gnu/packages/game-development.scm (openmw): Update to 0.45.0.
 2019-04-01 09:43:56 +02:00
Brian Leung
f125c5a5ea
gnu: emacs-zones: silence byte-compiler. 
* gnu/packages/patches/emacs-zones-called-interactively.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-31 23:32:47 +02:00
Pierre Langlois
7a352f76cf
gnu: gpodder: Build reproducibly. 
* gnu/packages/gpodder.scm (gpodder)[arguments]: Add 'do-not-run-msgmerge'
phase before 'install'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-31 23:32:47 +02:00
Tim Gesthuizen
bab7a49558
services: slim-configuration: Adapt exported getter methods. 
Commit 554b860739 introduces changes to the
slim-configuration record without updating the exported methods.

* gnu/services/xorg.scm: Export slim-configuration-xorg and
  slim-configuration-sessreg.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-31 23:32:46 +02:00
Ludovic Courtès
631a6e6377
doc: Document 'gdm-service-type'. 
* doc/guix.texi (X Window): Document 'gdm-service-type' and
'gdm-configuration'.  Take description of '.desktop' files from the
'slim-service-type' description.
* gnu/services/xorg.scm (gdm-service): Remove outdated comment.
 2019-03-31 23:32:46 +02:00
Marius Bakke
105fa9fcf7
gnu: ungoogled-chromium: Update to 73.0.3683.86-0.4c7fb6d [security fixes]. 
The update to Chromium 73 includes more than 60 security fixes.  See the
release announcement for more information:
<https://chromereleases.googleblog.com/2019/03/stable-channel-update-for-desktop_12.html>.

* gnu/packages/chromium.scm (%preserved-third-party-files): Drop
"net/third_party/http2" and "net/third_party/spdy".  Add "v8/src/third_party/siphash".
(%chromium-version): Update to 73.0.3683.86.
(%ungoogled-revision): Update to 4c7fb6d1a86602999f30b58ef8b331b2115c5ad8.
(%debian-revision): New variable.
(ungoogled-chromium-source): Add an origin for Debians packaging scripts.
Adjust for Ungoogled refactoring and add a procedure for applying Debian
patches.  Replace unneeded LET* for LET and reindent.
(ungoogled-chromium)[arguments]: Remove one obsolete substitution, add two others.
 2019-03-31 21:26:17 +02:00
Marius Bakke
799aebd71f
gnu: ungoogled-chromium: Enable VA-API on x86_64-linux only. 
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Conditionally add
"use_vaapi" to #:configure-flags.
 2019-03-31 21:26:17 +02:00
Marius Bakke
3725865f84
gnu: SDDM: Update to 0.18.1. 
* gnu/packages/display-managers.scm (sddm): Update to 0.18.1.
 2019-03-31 21:26:17 +02:00
Marius Bakke
a02d390357
gnu: mbedtls-apache: Update to 2.16.1. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.1.
 2019-03-31 21:26:16 +02:00
Marius Bakke
ee74a07668
gnu: pcsc-lite: Update to 1.8.25. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.25.
 2019-03-31 21:26:16 +02:00
Marius Bakke
1e3c711923
gnu: python-markdown: Update to 3.1. 
* gnu/packages/python-xyz.scm (python-markdown): Update to 3.1.
 2019-03-31 21:26:16 +02:00
Marius Bakke
fa542ee48a
gnu: ffmpeg@3.4: Update to 3.4.6. 
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.6.
 2019-03-31 21:26:16 +02:00
Marius Bakke
3b3fd90377
gnu: elogind: Update to 241.2. 
* gnu/packages/freedesktop.scm (elogind): Update to 241.2.
 2019-03-31 21:26:16 +02:00
Marius Bakke
4f0464c923
gnu: whois: Update to 5.4.2. 
* gnu/packages/networking.scm (whois): Update to 5.4.2.
 2019-03-31 21:26:16 +02:00
Marius Bakke
32deef23f6
gnu: libssh2: Update to 1.8.2. 
* gnu/packages/ssh.scm (libssh2): Update to 1.8.2.
 2019-03-31 21:26:16 +02:00
Marius Bakke
5089ebc3a3
gnu: GnuPG: Update to 2.2.15. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.15.
 2019-03-31 21:26:16 +02:00
Marius Bakke
5cc013f05d
gnu: leveldb: Update to 1.21. 
* gnu/packages/databases.scm (leveldb): Update to 1.21.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
 2019-03-31 21:26:15 +02:00
Marius Bakke
ad7c77fd75
gnu: leveldb: Don't use unstable tarball. 
* gnu/packages/databases.scm (leveldb)[source]: Use GIT-FETCH.
 2019-03-31 21:26:15 +02:00
Marius Bakke
e73ded3c71
services: Open vSwitch: Provide a default configuration. 
* gnu/services/networking.scm (openvswitch-service-type): Provide
OPENVSWITCH-CONFIGURATION as a default value.
* gnu/tests/networking.scm (%openvswitch-os): Don't configure the service.
 2019-03-31 21:26:15 +02:00
Ivan Petkov
d7d3bdca89
gnu: rust: Update to 1.32.0. 
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.31): ...this.
(rust): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-31 21:11:55 +02:00
Brett Gilio
ccbaeba38e
gnu: python-language-server: Update to 0.26.1. 
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.26.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-03-31 21:16:17 +03:00
Efraim Flashner
36a4366d79
gnu: Fix descriptions to not use quotes. 
* gnu/packages/admin.scm (wpa-supplicant-minimal, mingetty, di),
* gnu/packages/audio.scm (fil-plugins),
* gnu/packages/base.scm (make-ld-wrapper, make-glibc-locales),
* gnu/packages/bioinformatics.scm (r-samtools),
* gnu/packages/chez.scm (chez-mit),
* gnu/packages/commencement.scm (make-gcc-toolchain),
* gnu/packages/compression.scm (fastjar),
* gnu/packages/cran.scm (r-maps, r-rcpp),
* gnu/packages/databases.scm (sparql-query),
* gnu/packages/dunst.scm (dunst),
* gnu/packages/ftp.scm (ncftp),
* gnu/packages/gl.scm (freeglut),
* gnu/packages/haskell-check.scm (ghc-tasty-golden),
* gnu/packages/haskell.scm (ghc-case-insensitive, ghc-text,
ghc-haskell-src, ghc-syb, ghc-deepseq-generics, ghc-network-uri,
ghc-rerebase, ghc-zlib),
* gnu/packages/image.scm (jbig2dec),
* gnu/packages/kde-frameworks.scm (kinit, karchive),
* gnu/packages/linux.scm (wireless-tools, perf, module-init-tools, kbd),
* gnu/packages/lirc.scm (lirc),
* gnu/packages/lisp.scm (uglify-js),
* gnu/packages/mate.scm (mate-netbook),
* gnu/packages/microcom.scm (microcom),
* gnu/packages/music.scm (bristol),
* gnu/packages/networking.scm (perl-geo-ip),
* gnu/packages/patchutils.scm (patches),
* gnu/packages/perl-check.scm (perl-test-more-utf8),
* gnu/packages/perl.scm (perl-log-report-optional, perl-file-which,
perl-io-tty, perl-log-any, perl-digest-sha1, perl-class-load,
perl-regexp-common, perl-module-pluggable, perl-class-modifier),
* gnu/packages/python-xyz.scm (python-backports-abc, python-natsort),
* gnu/packages/samba.scm (iniparser),
* gnu/packages/search.scm (mlocate),
* gnu/packages/spice.scm (spice),
* gnu/packages/statistics.scm (r-dt, r-lubridate, r-estimability,
r-commonmark, r-digest, r-viridislite, r-stringr),
* gnu/packages/tex.scm (texlive-latex-changebar),
* gnu/packages/version-control.scm (subversion),
* gnu/packages/w3m.scm (w3m),
* gnu/packages/web.scm (perl-http-parser,
perl-plack-middleware-reverseproxy),
* gnu/packages/xorg.scm (xkeyboard-config, mkfontdir, xcursor-theme,
mkfontscale, xinit, font-alias)[description]: Use @code instead of quotes.
 2019-03-31 20:51:10 +03:00
Tobias Geerinckx-Rice
cd9ca20a5d
gnu: znc: Update to 1.7.3. 
* gnu/packages/messaging.scm (znc): Update to 1.7.3.
 2019-03-31 16:05:18 +02:00
Nicolas Goaziou
ad4f644226
gnu: Add flare. 
* gnu/packages/games.scm (flare-engine, flare-game): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2019-03-31 10:35:31 +08:00
Leo Famulari
6d3e149f10
gnu: dovecot: Update to 2.3.5.1 [fixes CVE-2019-7524]. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.5.1.
 2019-03-30 15:57:13 -04:00
Leo Famulari
6e1f91d91c
gnu: khal: Update to 0.10.0. 
* gnu/packages/calendar.scm (khal): Update to 0.10.0.
[native-inputs]: Replace tzdata with tzdata-for-tests.
[arguments]: Simplify the check phase.
 2019-03-30 15:10:19 -04:00
Ludovic Courtès
e23f2ff183
gnu: Rename "gnubackgammon" back to "gnubg". 
This reverts c97e4d8bbe, which was not
consensual and broke 'tests/guix-package.sh'.

* gnu/packages/games.scm (gnubackgammon): Rename to...
(gnubg): ... this, and rename the 'gnubg' deprecated alias to
'gnubackgammon'.
 2019-03-30 15:19:32 +01:00
Ludovic Courtès
329c3c323e
gnu: guile: Remove version 2.0.13. 
This package was unused since 0991fd5336.

* gnu/packages/guile.scm (guile-2.0.13): Remove.
 2019-03-30 15:19:32 +01:00
Ludovic Courtès
528ea990c3
gnu: Use 'this-package' as a native input instead of 'self-native-input?'. 
* gnu/packages/file.scm (file)[self-native-input?]: Remove.
[native-inputs]: New field.
* gnu/packages/guile.scm (guile-1.8)[self-native-input?]: Remove.
[native-inputs]: New field.
(guile-2.0)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/ncurses.scm (ncurses)[self-native-input?]: Remove.
[native-inputs]: Add THIS-PACKAGE when (%current-target-system) is true.
* gnu/packages/python-xyz.scm (python-file)[self-native-input?]: Remove.
[native-inputs]: New field.
 2019-03-30 15:19:32 +01:00
Timothy Sample
398747f8f1
gnu: gnome-shell: Remove gnome-control-center from inputs. 
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Remove
gnome-control-center.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-30 15:19:32 +01:00
Timothy Sample
da43d1cb32
gnu: evolution-data-server: Add 'libedataserverui' output. 
gnu/packages/gnome.scm (evolution-data-server)[outputs]: Add
'libedataserverui'.
[arguments]: Add phases so that only libedataserverui is linked with
WebKitGTK, and that it is moved to its own output.
(evolution, gnome-calendar, gnome-todo)[inputs]: Add libedataserverui.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-30 15:19:31 +01:00
Timothy Sample
14c297fde1
gnu: gnome-online-accounts: Split off 'lib' output. 
gnu/packages/gnome.scm (gnome-online-accounts)[outputs]: Add 'lib'.
[arguments]: Set the 'libdir' path to the 'out' output, and add a phase
to ensure that libgoa gets installed in the 'lib' output.
(evolution-data-server, gfbgraph, gnome-calendar, gnome-control-center,
gnome-todo, libgdata, libzapojit): Use the 'lib' output of
gnome-online-accounts.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-30 15:19:31 +01:00
Brian Leung
29a9eb9e1a
gnu: Add emacs-counsel-projectile. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-30 17:03:57 +03:00
Rutger Helling
03a33eee72
gnu: wine-staging: Update to 4.5. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.5.
* gnu/packages/wine.scm (wine-staging): Update to 4.5.
 2019-03-30 14:58:36 +01:00
Ludovic Courtès
d8bead6c5d
system: Define 'this-operating-system'. 
* gnu/system.scm (<operating-system>): Choose 'this-operating-system' as
the 'this' identifier.
[essential-services]: Adjust accordingly.
 2019-03-30 11:08:39 +01:00
Ludovic Courtès
adb6462c4c
packages: Define 'this-package' and 'this-origin'. 
* guix/packages.scm (<origin>): Choose 'this-origin' as the 'this'
identifier.
(<package>): Choose 'this-package'.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Use 'this-package'
instead of 'this-record'.
* gnu/packages/version-control.scm (git)[arguments]: Likewise.
 2019-03-30 11:08:39 +01:00
Ricardo Wurmus
ec12e53736
gnu: Add r-xcms. 
* gnu/packages/bioconductor.scm (r-xcms): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus
c8310056f4
gnu: Add r-massspecwavelet. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus
50d9177051
gnu: Add r-xbseq. 
* gnu/packages/bioconductor.scm (r-xbseq): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus
a6e1eb1a96
gnu: Add r-roar. 
* gnu/packages/bioconductor.scm (r-roar): New variable.
 2019-03-30 08:55:46 +01:00
Ricardo Wurmus
98a2af31a8
gnu: Add r-yarn. 
* gnu/packages/bioconductor.scm (r-yarn): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
59cf26292f
gnu: Add r-quantro. 
* gnu/packages/bioconductor.scm (r-quantro): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
8d1990d495
gnu: Add r-downloader. 
* gnu/packages/cran.scm (r-downloader): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
f562c90aa8
gnu: Add r-yaqcaffy. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
4675b3cfa3
gnu: Add r-simpleaffy. 
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
e99380d67b
gnu: Add r-gcrma. 
* gnu/packages/bioconductor.scm (r-gcrma): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
303f2ed1c6
gnu: Add r-yapsa. 
* gnu/packages/bioconductor.scm (r-yapsa): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
28098414d0
gnu: Add r-somaticsignatures. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
398c4a9347
gnu: Add r-gtrellis. 
* gnu/packages/bioconductor.scm (r-gtrellis): New variable.
 2019-03-30 08:55:45 +01:00
Ricardo Wurmus
9563dd5599
gnu: Add r-pmcmr. 
* gnu/packages/cran.scm (r-pmcmr): New variable.
 2019-03-30 08:55:45 +01:00
Mark H Weaver
bc91562939
gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat. 
Fixes <https://bugs.gnu.org/34454>.

* gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+/fixed): New variable.
(gtk+)[replacement]: New field.
 2019-03-30 02:34:24 -04:00
Tobias Geerinckx-Rice
c948cf9092
gnu: Add font-iosevka-slab. 
The ’slab’ variants of Iosevka were moved to a separate archive with
version 2.0.0.

* gnu/packages/fonts.scm (font-iosevka-slab): New public variable.
 2019-03-29 21:09:11 +01:00
Tobias Geerinckx-Rice
785747a974
gnu: font-iosevka: Update to 2.2.0. 
* gnu/packages/fonts.scm (font-iosevka): Update to 2.2.0.
 2019-03-29 21:00:23 +01:00
Ricardo Wurmus
51e98f7e0f
gnu: Add r-yamss. 
* gnu/packages/bioconductor.scm (r-yamss): New variable.
 2019-03-29 19:28:11 +01:00
Ricardo Wurmus
5cfa4bff69
gnu: Add r-ebimage. 
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
 2019-03-29 19:28:03 +01:00
Ricardo Wurmus
ffe7029bab
gnu: Add r-aucell. 
* gnu/packages/bioconductor.scm (r-aucell): New variable.
 2019-03-29 18:10:46 +01:00
Ricardo Wurmus
f31e10f82e
gnu: Add r-allelicimbalance. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
 2019-03-29 18:07:17 +01:00
Ricardo Wurmus
adf7d8135b
gnu: Add r-annotationtools. 
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
 2019-03-29 18:05:45 +01:00
Ricardo Wurmus
0b91b7b969
gnu: Add r-annotationfuncs. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
 2019-03-29 17:49:54 +01:00
Ricardo Wurmus
9bf4bb19c9
gnu: Add r-abaenrichment. 
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus
3972cfce6a
gnu: Add r-gofuncr. 
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus
692bce1595
gnu: Add r-abadata. 
* gnu/packages/bioconductor.scm (r-abadata): New variable.
 2019-03-29 17:46:33 +01:00
Ricardo Wurmus
1fab2cf811
gnu: Add r-mapplots. 
* gnu/packages/cran.scm (r-mapplots): New variable.
 2019-03-29 17:43:25 +01:00
Ricardo Wurmus
32e0f906d7
gnu: Add r-atacseqqc. 
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus
e5bff3079d
gnu: Add r-genomicscores. 
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus
2a72ef561b
gnu: Add r-motifstack. 
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus
229f97c37a
gnu: Add r-motiv. 
* gnu/packages/bioconductor.scm (r-motiv): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus
051e8e1a5b
gnu: Add r-rgadem. 
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus
c54ab337bc
gnu: Add r-preseqr. 
* gnu/packages/cran.scm (r-preseqr): New variable.
 2019-03-29 17:13:45 +01:00
Ricardo Wurmus
41aab7d186
gnu: Add r-bacon. 
* gnu/packages/bioconductor.scm (r-bacon): New variable.
 2019-03-29 17:13:41 +01:00
Ludovic Courtès
9398152ad1
gnu: php: Fix typo. 
Regression introduced in e8cfce439a.

* gnu/packages/php.scm (php)[arguments]: Add missing 'else' branch of
the 'if'.  Change first argument to 'string-prefix?' to match GNU
triplets as well.
 2019-03-29 15:35:54 +01:00
Efraim Flashner
8339ccac5f
gnu: python-faiss: Fix building on non-Intel architectures. 
* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom
'build-swig phase to change build flags for different archictures.
 2019-03-29 17:08:05 +03:00
Efraim Flashner
3776dc094c
gnu: faiss: Fix building on non-Intel architectures. 
* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel
specific headers.
[arguments]: Adjust custom 'prepare-build phase to adjust compile flags
for different architectures.
 2019-03-29 17:08:02 +03:00
Ricardo Wurmus
4774677228
gnu: stepmania: Fix all instances of accessing application data. 
This is a follow-up to commit 45aba232ab.

* gnu/packages/games.scm (stepmania)[arguments]: Rename phase
ensure-gtk-module-can-be-found to ensure-application-files-can-be-found and
fix remaining instances of application data access.
 2019-03-29 14:14:19 +01:00
Leo Famulari
47131ebbc9
gnu: Stellarium: Update to 0.19.0. 
* gnu/packages/astronomy.scm (stellarium): Update to 0.19.0.
[arguments]: Remove obsolete 'patch-tests' phase.
 2019-03-29 02:37:28 -04:00
Ricardo Wurmus
45aba232ab
gnu: stepmania: Fix loading of gtk module. 
Fixes <https://bugs.gnu.org/34854>.

Suggested by Nicolas Goaziou.

* gnu/packages/games.scm (stepmania)[arguments]: Add phase
"ensure-gtk-module-can-be-found".
 2019-03-29 07:14:17 +01:00
Ricardo Wurmus
d656aea0ef
gnu: zynaddsubfx: Update to 3.0.4. 
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.4.
 2019-03-29 06:48:13 +01:00
Ricardo Wurmus
59d331f16a
gnu: Add r-abseqr. 
* gnu/packages/bioconductor.scm (r-abseqr): New variable.
 2019-03-29 06:35:57 +01:00
Ricardo Wurmus
f084e41e2c
gnu: Add r-flexdashboard. 
* gnu/packages/cran.scm (r-flexdashboard): New variable.
 2019-03-29 06:35:48 +01:00
Ricardo Wurmus
d2aa2d2451
gnu: r-png: Move to (gnu packages cran). 
* gnu/packages/image.scm (r-png): Move from here...
* gnu/packages/cran.scm (r-png): ...to here.
 2019-03-29 06:34:39 +01:00
Ricardo Wurmus
d8a28332c5
gnu: Add r-ggcorrplot. 
* gnu/packages/cran.scm (r-ggcorrplot): New variable.
 2019-03-29 05:39:35 +01:00
Nicolas Goaziou
4e43e3175e
gnu: Add openclonk. 
* gnu/packages/games.scm (openclonk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-29 05:34:45 +01:00
Ricardo Wurmus
e040413e0a
gnu: r-cairo: Update to 1.5-10. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-10.
[inputs]: Add zlib.
 2019-03-29 05:34:45 +01:00
Tobias Geerinckx-Rice
07de94d6a4
gnu: hyperrogue: Don't use NAME in hyperrogue-data. 
* gnu/packages/games.scm (hyperrogue)[native-inputs]: Hard code NAME in
hyperrogue-data source URI.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice
4959856443
gnu: quadrapassel: Don't use NAME in source URI. 
* gnu/packages/games.scm (quadrapassel)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice
5b35bdaaa5
gnu: libmanette: Don't use NAME in source URI. 
* gnu/packages/games.scm (libmanette)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice
98e27db5bb
gnu: frotz-dumb-terminal: Merge strings in URI. 
* gnu/packages/games.scm (frotz-dumb-terminal)[source]: Merge separate
string components, probably from a naive ’s/name/"name"/’ substitution.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice
e2c9f9de9f
gnu: frotz: Don't use NAME in source URI. 
* gnu/packages/games.scm (frotz)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice
a6ac8e0b31
gnu: fortune-mod: Don't use NAME in source COMMIT. 
* gnu/packages/games.scm (fortune-mod)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice
30b8b2013b
gnu: lugaru: Don't use NAME in source URI. 
* gnu/packages/games.scm (lugaru)[source]: Hard-code NAME.
 2019-03-29 04:07:44 +01:00
Tobias Geerinckx-Rice
146a4459db
gnu: no-more-secrets: Don't use unstable tarball. 
* gnu/packages/games.scm (no-more-secrets)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice
a01aea7d66
gnu: hyperrogue: Don't use NAME in source URI. 
* gnu/packages/games.scm (hyperrogue)[source]: Hard-code NAME.
 2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice
ed9bcf50d3
gnu: mrrescue: Don't use NAME in source URI. 
* gnu/packages/games.scm (mrrescue)[source]: Hard-code NAME.
 2019-03-29 04:07:43 +01:00
Tobias Geerinckx-Rice
22da44e8c2
gnu: laby: Don't use NAME in source URI. 
* gnu/packages/games.scm (laby)[source]: Hard-code NAME.
 2019-03-29 04:07:43 +01:00
Ricardo Wurmus
e9d4409bab
gnu: Add python-bbknn. 
* gnu/packages/bioinformatics.scm (python-bbknn): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus
c91ecf2db4
gnu: Add python-annoy. 
* gnu/packages/python-xyz.scm (python-annoy): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus
51a9971ccb
gnu: Add python-faiss. 
* gnu/packages/graph.scm (python-faiss): New variable.
 2019-03-29 03:55:45 +01:00
Ricardo Wurmus
3e40318772
gnu: Add faiss. 
* gnu/packages/graph.scm (faiss): New variable.
 2019-03-29 03:55:45 +01:00
Tobias Geerinckx-Rice
631b20f90b
gnu: red-eclipse: Use GIT-FETCH for data sources. 
* gnu/packages/games.scm (red-eclipse): Update DATA-SOURCE hashes.
[arguments]: COPY-RECURSIVELY instead of extracting tarballs.
[inputs]: Use GIT-FETCH and GIT-FILE-NAME for all DATA-SOURCES.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice
e464bd607a
gnu: chromium-bsu: Don't use NAME in source URI. 
* gnu/packages/games.scm (chromium-bsu)[source]: Hard-code NAME.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice
d8f4aefed9
gnu: warzone2100: Update source URI. 
* gnu/packages/games.scm (warzone2100)[source]: Update URI and don't
hard-code NAME.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice
c41b2ffbf2
gnu: grue-hunter: Don't use NAME in source URI. 
* gnu/packages/games.scm (grue-hunter)[source]: Hard-code NAME.
 2019-03-29 04:23:02 +01:00
Tobias Geerinckx-Rice
bb7c071b94
gnu: red-eclipse: Don't use unstable tarball. 
* gnu/packages/games.scm (red-eclipse)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 04:23:02 +01:00
Danny Milosavljevic
586d30caa2
gnu: rust: Fix test setup. 
* gnu/packages/rust.scm (rust-1.30)[arguments]<#:phases>
[disable-amd64-avx-test]: Replace.
(rust)[arguments]<#:phases>[disable-amd64-avx-test]: Replace.
 2019-03-29 00:50:35 +01:00
Ivan Petkov
339c1365fd
gnu: rust: Refactor in order to prepare for newer Rust versions. 
* gnu/packages/rust.scm (rust-source): Rename to...
(rust-source-pre-1.32): ...this.  Add PATCH-FLAGS.
(rust-bootstrapped-package): Rename to...
(rust-bootstrapped-package-pre-1.32): ...this.
(rust-source): New procedure.
(rust-bootstrapped-package): New procedure.
(mrustc): Use rust-bootstrapped-package-pre-1.32.
(rust-1.19): Use rust-bootstrapped-package-pre-1.32.
(rust-1.20): Use rust-bootstrapped-package-pre-1.32.
(rust-1.21): Use rust-bootstrapped-package-pre-1.32.
(rust-1.22): Use rust-bootstrapped-package-pre-1.32.
(rust-1.23): Use rust-bootstrapped-package-pre-1.32.
(rust-1.24): Use rust-bootstrapped-package-pre-1.32.
(rust-1.25): Use rust-bootstrapped-package-pre-1.32.
(rust-1.26): Use rust-bootstrapped-package-pre-1.32.
(rust-1.27): Use rust-bootstrapped-package-pre-1.32.
(rust-1.28): Use rust-bootstrapped-package-pre-1.32.
(rust-1.29): Use rust-bootstrapped-package-pre-1.32.
(rust-1.30): Use rust-bootstrapped-package-pre-1.32.
(rust): Use rust-bootstrapped-package-pre-1.32.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-29 00:50:35 +01:00
Tobias Geerinckx-Rice
1d6c047937
gnu: powwow: Remove redundant FILE-NAME. 
* gnu/packages/games.scm (powwow)[source]: Remove FILE-NAME.
 2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice
2e5a0690bb
gnu: openrct2: Don't use unstable tarball. 
* gnu/packages/games.scm (openrct2)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice
071782762a
gnu: fizmo: Don't use NAME in source URI. 
* gnu/packages/games.scm (fizmo)[source]: Hard-code NAME.
 2019-03-29 01:44:09 +01:00
Tobias Geerinckx-Rice
00a82e8385
gnu: mars: Use GIT-FILE-NAME. 
* gnu/packages/games.scm (mars)[source]: Use GIT-FILE-NAME.
 2019-03-29 01:44:09 +01:00
Mark H Weaver
fa3c2aad65
gnu: linux-libre: Update to 5.0.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.5.
(%linux-libre-hash): Update hash.
 2019-03-28 19:36:22 -04:00
Mark H Weaver
4bdf98f62f
gnu: linux-libre@4.19: Update to 4.19.32. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.32.
(%linux-libre-4.19-hash): Update hash.
 2019-03-28 19:36:19 -04:00
Mark H Weaver
8ea1d2b5bd
gnu: linux-libre@4.14: Update to 4.14.109. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.109.
(%linux-libre-4.14-hash): Update hash.
 2019-03-28 19:36:17 -04:00
Mark H Weaver
aa5a425c8f
gnu: linux-libre@4.9: Update to 4.9.166. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.166.
 2019-03-28 19:36:14 -04:00
Tobias Geerinckx-Rice
feb50ac6dc
gnu: l-abbaye-des-morts: Don't use unstable tarball. 
This also fixes a build failure due to the use of NAME.

* gnu/packages/games.scm (l-abbaye-des-morts)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 00:55:01 +01:00
Tobias Geerinckx-Rice
a8a96bbead
gnu: prboom-plus: Don't use NAME in source URI. 
* gnu/packages/games.scm (prboom-plus)[source]: Hard-code NAME.
 2019-03-29 00:50:36 +01:00
Tobias Geerinckx-Rice
96848ecc16
gnu: pipewalker: Don't use NAME in source URI. 
* gnu/packages/games.scm (pipewalker)[source]: Hard-code NAME.
 2019-03-29 00:47:55 +01:00
Tobias Geerinckx-Rice
a544817e80
gnu: nethack: Don't use NAME in source URI. 
* gnu/packages/games.scm (nethack)[source]: Hard-code NAME, not VERSION.
 2019-03-29 00:46:36 +01:00
Tobias Geerinckx-Rice
dd0369f426
gnu: ltris: Don't use NAME in source URI. 
* gnu/packages/games.scm (ltris)[source]: Hard-code NAME.
 2019-03-29 00:43:05 +01:00
Tobias Geerinckx-Rice
9303b09a78
gnu: freedoom: Re-indent. 
* gnu/packages/games.scm (freedoom): Re-indent expression.
 2019-03-29 00:42:08 +01:00
Tobias Geerinckx-Rice
7c8ed74516
gnu: freedoom: Don't use unstable tarball. 
* gnu/packages/games.scm (freedoom)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-29 00:39:58 +01:00
Tobias Geerinckx-Rice
0922354d6a
gnu: cowsay: Don't use NAME in source URI. 
* gnu/packages/games.scm (cowsay)[source]: Hard-code NAME.
 2019-03-29 00:29:44 +01:00
Tobias Geerinckx-Rice
c0c099502b
gnu: armagetron-advanced: Don't use NAME in source URI. 
* gnu/packages/games.scm (armagetron-advanced)[source]: Hard-code NAME.
 2019-03-29 00:28:49 +01:00
Tobias Geerinckx-Rice
69a0717c66
gnu: project-starfighter: Don't use NAME in source URI. 
* gnu/packages/games.scm (project-starfighter)[source]: Hard-code NAME.
 2019-03-29 00:26:45 +01:00
Ludovic Courtès
357b287b8f
services: desktop: Switch to GDM. 
* gnu/services/desktop.scm (%desktop-services): Replace
SLIM-SERVICE-TYPE instance with an instance of GDM-SERVICE-TYPE.
* doc/guix.texi (Keyboard Layout): Change example to mention
GDM-SERVICE-TYPE.
(X Window): Mention GDM.
(Desktop Services): Adjust references to SLiM.
 2019-03-28 23:06:59 +01:00
Ludovic Courtès
971e6560eb
system: Fix typo in desktop example. 
The typo was introduced in 391e0d65d7.

* gnu/system/examples/desktop.tmpl: Use XFCE-DESKTOP-SERVICE-TYPE, not
XFCE-DESKTOP-SERVICE.
 2019-03-28 23:06:59 +01:00
Ludovic Courtès
c9711f9347
gnu: ratpoison: Provide a .desktop file with an absolute file name. 
This allows GDM to start ratpoison.  Without that GDM crashes with an
assertion failure when trying to start a ratpoison session.

* gnu/packages/ratpoison.scm (ratpoison.desktop): Remove.
(ratpoison.desktop)[arguments]: Add #:modules.
Rewrite 'install-xsession' phase such that .desktop file contains an
absolute file name.
 2019-03-28 23:06:59 +01:00
Ludovic Courtès
f2bf0407de
packages: Reintroduce 'find-newest-available-packages'. 
This is a followup to e2a903c807.

* gnu/packages.scm (find-newest-available-packages): New procedure.
 2019-03-28 23:06:58 +01:00
Julien Lepiller
e8cfce439a
gnu: php: Disable failing tests on armhf. 
* gnu/packages/php.scm (php)[arguments]: Disable failing tests on armhf.
 2019-03-28 22:59:14 +01:00
Efraim Flashner
241885347a
gnu: reptyr: Enable support for aarch64-linux. 
* gnu/packages/screen.scm (reptyr)[supported-systems]: Mark
aarch64-linux as supported.
 2019-03-28 21:42:00 +02:00
Brian Leung
d2df92e47c
gnu: Add emacs-link-hint. 
* gnu/packages/emacs-xyz.scm (emacs-link-hint): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-28 21:31:43 +03:00
Tobias Geerinckx-Rice
40d59c4e22
gnu: dropbear: Don't use unstable tarball. 
* gnu/packages/screen.scm (dropbear)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice
cf9ab49e97
gnu: dropbear: Update to 2019.78. 
* gnu/packages/ssh.scm (dropbear): Update to 2019.78.
 2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice
01307bba9c
gnu: reptyr: Update to 0.7.0. 
* gnu/packages/screen.scm (reptyr): Update to 0.7.0.
[source]: Remove patch.
[arguments]: Add bash completion directory name.
* gnu/packages/patches/reptyr-fix-gcc-7.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-28 20:19:28 +01:00
Tobias Geerinckx-Rice
6da31b3c7b
gnu: dvdisaster: Use archived source and home page. 
* gnu/packages/cdrom.scm (dvdisaster)[source, home-page]:
Use archive.org mirror.
 2019-03-28 20:19:28 +01:00
Brian Leung
29e3fd3424
gnu: emacs-dired-hacks: Update to 0.0.1-1.2c12345. 
* gnu/packages/emacs-xyz.scm (emacs-dired-hacks): Update to 0.0.1-1.2c12345.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-28 21:09:10 +03:00
Efraim Flashner
642b195a70
gnu: gzdoom: Limit supported architectures. 
* gnu/packages/games.scm (gzdoom)[supported-systems]: New field.
 2019-03-28 19:58:35 +02:00
Ricardo Wurmus
84ad024e2d
gnu: Add r-a4. 
* gnu/packages/bioconductor.scm (r-a4): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
dbfe337586
gnu: Add r-a4base. 
* gnu/packages/bioconductor.scm (r-a4base): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
8e15f86139
gnu: Add r-a4reporting. 
* gnu/packages/bioconductor.scm (r-a4reporting): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
b8d13e2c0e
gnu: Add r-a4preproc. 
* gnu/packages/bioconductor.scm (r-a4preproc): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
9ae37581e0
gnu: Add r-a4classif. 
* gnu/packages/bioconductor.scm (r-a4classif): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
0ec0a5ecc9
gnu: Add r-a4core. 
* gnu/packages/bioconductor.scm (r-a4core): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
a793e88c5e
gnu: Add r-annaffy. 
* gnu/packages/bioconductor.scm (r-annaffy): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
ce77562a9e
gnu: Add r-mlinterfaces. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
409a13fe76
gnu: Add r-mpm. 
* gnu/packages/cran.scm (r-mpm): New variable.
 2019-03-28 18:23:23 +01:00
Ricardo Wurmus
74cada8ef1
gnu: Add r-mlbench. 
* gnu/packages/cran.scm (r-mlbench): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
efba56139a
gnu: Add r-threejs. 
* gnu/packages/cran.scm (r-threejs): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
d59df3340b
gnu: Add r-gbm. 
* gnu/packages/cran.scm (r-gbm): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
8473597f80
gnu: Add r-ggvis. 
* gnu/packages/cran.scm (r-ggvis): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
fe3fb4e7ef
gnu: Add r-rda. 
* gnu/packages/cran.scm (r-rda): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
aae0b86d35
gnu: Add r-pamr. 
* gnu/packages/cran.scm (r-pamr): New variable.
 2019-03-28 18:23:22 +01:00
Ricardo Wurmus
1c0c4b544d
gnu: Add r-varselrf. 
* gnu/packages/cran.scm (r-varselrf): New variable.
 2019-03-28 18:23:22 +01:00
Efraim Flashner
1aa662b309
gnu: ogre: Don't use unstable tarball. 
* gnu/packages/graphics.scm (ogre)[source]: Download using git-fetch.
 2019-03-28 12:14:22 +02:00
Efraim Flashner
d5640c587f
gnu: googletest: Don't use unstable tarball. 
* gnu/packages/check.scm (googletest)[source]: Download using git-fetch.
* gnu/packages/crypto.scm (encfs)[arguments]: Adjust accordingly.
* gnu/packages/gnucash.scm (gnucash)[arguments]: Same.
* gnu/packages/terminals.scm (eternalterminal)[arguments]: Same.
* gnu/packages/graphics.scm (ogre)[arguments]: Same. Remove now
unnecessary custom 'pre-build phase.
 2019-03-28 12:14:15 +02:00
Ricardo Wurmus
d98fb5603b
gnu: hpcguix-web: Fix indentation. 
* gnu/packages/web.scm (hpcguix-web): Fix indentation.
 2019-03-27 23:11:20 +01:00
Efraim Flashner
d8de2c01ff
gnu: emacs-emmet-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-emmet-mode)[source]: Download using
git-fetch.
 2019-03-27 23:05:08 +02:00
Efraim Flashner
0f8ff55513
gnu: emacs-tablist: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-tablist)[source]: Download using
git-fetch.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
b762dde997
gnu: emacs-mmm-mode: Update to 0.5.7. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.7.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
d3f6617b26
gnu: emacs-mmm-mode: Remove unnecessary phase. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[arguments]: Remove
unnecessary 'autogen phase.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
8cd07b72e9
gnu: emacs-mmm-mode: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-mmm-mode)[source]: Don't use
unstable tarball.
 2019-03-27 23:05:07 +02:00
Efraim Flashner
49464d2b16
gnu: emacs-google-maps: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-google-maps)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner
2c19ff18e2
gnu: emacs-direnv: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-direnv)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner
39a46a1f10
gnu: emacs-calfw: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-calfw)[source]: Download using
git-fetch.
 2019-03-27 23:05:06 +02:00
Efraim Flashner
b4f96f3b3b
gnu: emacs-autothemer: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-autothemer)[source]: Download using
git-fetch.
 2019-03-27 23:05:05 +02:00
Efraim Flashner
3cf9a85ba7
gnu: emacs-ag: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-ag)[source]: Download using
git-fetch.
 2019-03-27 23:05:02 +02:00
Efraim Flashner
c6abe90478
gnu: font-open-dyslexic: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-open-dyslexic)[source]: Download using
git-fetch.
 2019-03-27 22:25:17 +02:00
Efraim Flashner
1e90e4b0d9
gnu: font-google-material-design-icons: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-google-material-design-icons)[source]:
Download using git-fetch.
 2019-03-27 22:25:17 +02:00
Efraim Flashner
1f07550c86
gnu: font-tamzen: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-tamzen)[source]: Download using
git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
 2019-03-27 22:25:16 +02:00
Efraim Flashner
c2426dbddc
gnu: font-fira-sans: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-fira-sans)[source]: Download using
git-fetch.
 2019-03-27 22:25:16 +02:00
Efraim Flashner
8f4dccf75d
gnu: font-adobe-source-han-sans: Don't use unstable tarball. 
* gnu/packages/fonts.scm (font-adobe-source-han-sans)[source]: Download
using git-fetch.
[native-inputs]: Remove gzip, tar.
[arguments]: Adjust build accordingly.
 2019-03-27 22:25:13 +02:00
Ricardo Wurmus
3d17dc5d8f
gnu: r-geometry: Update to 0.4.1. 
* gnu/packages/cran.scm (r-geometry): Update to 0.4.1.
[propagated-inputs]: Fix typo.
 2019-03-27 21:00:28 +01:00
Ricardo Wurmus
1d7022f706
gnu: r-feather: Update to 0.3.3. 
* gnu/packages/cran.scm (r-feather): Update to 0.3.3.
 2019-03-27 21:00:28 +01:00
Nicolas Goaziou
24540c310f
gnu: Add emacs-relint. 
* gnu/packages/emacs-xyz.scm (emacs-relint): New variable.
 2019-03-27 20:41:29 +01:00
Brian Leung
c881ed8698
gnu: Add emacs-zones. 
* gnu/packages/emacs-xyz.scm (emacs-zones): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-03-27 22:18:32 +03:00
Ricardo Wurmus
f8295ee6de
gnu: Add r-clusterprofiler. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus
9c30cf65d2
gnu: Add r-enrichplot. 
* gnu/packages/bioconductor.scm (r-enrichplot): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus
305050b56d
gnu: Add r-dose. 
* gnu/packages/bioconductor.scm (r-dose): New variable.
 2019-03-27 16:17:20 +01:00
Ricardo Wurmus
11f226e124
gnu: Add r-ggraph. 
* gnu/packages/cran.scm (r-ggraph): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
b5b0a2ff49
gnu: Add r-europepmc. 
* gnu/packages/cran.scm (r-europepmc): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
83f43284c3
gnu: Add r-ggforce. 
* gnu/packages/cran.scm (r-ggforce): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
d4ff09af0d
gnu: Add r-urltools. 
* gnu/packages/cran.scm (r-urltools): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
09dde7fb01
gnu: Add r-polyclip. 
* gnu/packages/cran.scm (r-polyclip): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
91e06bedf8
gnu: Add r-tweenr. 
* gnu/packages/cran.scm (r-tweenr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
85431ca3a8
gnu: Add r-triebeard. 
* gnu/packages/cran.scm (r-triebeard): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
e25828839d
gnu: Add r-ggplotify. 
* gnu/packages/cran.scm (r-ggplotify): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
1c59ec707e
gnu: Add r-farver. 
* gnu/packages/cran.scm (r-farver): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
585d5ae0fb
gnu: Add r-gridgraphics. 
* gnu/packages/cran.scm (r-gridgraphics): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
f8a5af4653
gnu: Add r-do-db. 
* gnu/packages/bioconductor.scm (r-do-db): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
af26c7ae70
gnu: Add r-fgsea. 
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
0d50d0df08
gnu: Add r-msigdbr. 
* gnu/packages/cran.scm (r-msigdbr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
2d70460892
gnu: Add r-xkcd. 
* gnu/packages/cran.scm (r-xkcd): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
2331bf2a64
gnu: Add r-extrafont. 
* gnu/packages/cran.scm (r-extrafont): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus
b6933ea634
gnu: Add r-extrafontdb. 
* gnu/packages/cran.scm (r-extrafontdb): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus
81df4e1e98
gnu: Add r-rttf2pt1. 
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
 2019-03-27 16:17:18 +01:00
Ludovic Courtès
06013a45aa
gnu: emacs-debbugs: Update to 0.17. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
 2019-03-27 14:59:42 +01:00
Ricardo Wurmus
18c51cf3d3
gnu: Add r-xyz. 
* gnu/packages/cran.scm (r-xyz): New variable.
 2019-03-27 14:43:26 +01:00
Ludovic Courtès
45c0d1d790
vm: Ask QEMU for more RAM in the VM that makes ISO9660 images. 
* gnu/system/vm.scm (iso9660-image): Pass #:memory-size to
'expression->derivation-in-linux-vm'.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
391e0d65d7
services: Deprecate 'xfce-desktop-service'. 
* gnu/services/desktop.scm (xfce-desktop-service-type)[default-value]
[description]: New fields.
(xfce-desktop-service): Deprecate.
* gnu/system/examples/desktop.tmpl: Use the (service …) form.
* gnu/installer/services.scm (%desktop-environments): Add TODO comment.
* doc/guix.texi (Desktop Services): Adjust accordingly, and fix spelling
of "Xfce" throughout.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
ee05cc7fe3
services: Deprecate 'gnome-desktop-service'. 
* gnu/services/desktop.scm (gnome-desktop-service-type)[default-value]:
New field.
(gnome-desktop-service): Deprecate.
* gnu/installer/services.scm (%desktop-environments): Use the (service …)
form for GNOME.
* gnu/system/examples/desktop.tmpl: Likewise.
* doc/guix.texi (Desktop Services): Adjust accordingly.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
1c155ec76b
installer: Use the (service …) form for MATE. 
* gnu/installer/services.scm (%desktop-environments): Use
'mate-desktop-service-type' for MATE.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
c73e554c3f
installer: Ask for confirmation before formatting partitions. 
* gnu/installer/newt/page.scm (run-confirmation-page): New procedure.
* gnu/installer/newt/partition.scm (draw-formatting-page): Call it.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
50247be5f4
installer: Produce an 'initrd-modules' field if needed. 
* gnu/installer/parted.scm (root-user-partition?): New procedure.
(bootloader-configuration): Use it.
(user-partition-missing-modules, initrd-configuration): New procedures.
(user-partitions->configuration): Call 'initrd-configuration'.o
* gnu/installer.scm (not-config?): Rename to...
(module-to-import?): ... this.  Add cases to exclude non-installer and
non-build (gnu …) modules.
(installer-program)[installer-builder]: Add GUIX to the extension list.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
54043bf23f
installer: Emit 'bootloader' field before 'swap-devices'. 
* gnu/installer/parted.scm (user-partitions->configuration): Move
'bootloader' section above 'swap-devices'.
 2019-03-27 11:54:05 +01:00
Pierre Neidhardt
37099f5844
gnu: Add emacs-webfeeder. 
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
 2019-03-27 11:33:09 +01:00
Ricardo Wurmus
58d8225ddb
gnu: trim-galore: Add pigz. 
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
 2019-03-27 11:32:08 +01:00
Ricardo Wurmus
5f1e31094d
gnu: trim-galore: Fix test for Python. 
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
 2019-03-27 11:28:38 +01:00
Ricardo Wurmus
2a509880d4
gnu: hdf-java: Adjust indentation. 
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
 2019-03-27 10:47:34 +01:00
Ricardo Wurmus
64dc8b0bfd
gnu: hdf-java: Fix build. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
 2019-03-27 10:13:46 +01:00
Ricardo Wurmus
9286c0f7e8
gnu: hdf-java: Use INVOKE. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
 2019-03-27 10:12:57 +01:00
Ricardo Wurmus
dfe420ee46
gnu: r-rhdf5lib: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
a12c527d3c
gnu: r-hdf5r: Update to 1.1.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
a7332d1a2f
gnu: r-caret: Update to 6.0-82. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
733b3c59da
gnu: r-gtable: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
fc64504f2d
gnu: grantlee: Delete broken tests. 
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
 2019-03-27 09:33:50 +01:00
Kei Kebreau
4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl. 
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
 2019-03-26 20:59:15 -04:00
Pierre Langlois
4dcf221c85
gnu: qjackctl: Re-enable xunique. 
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.

See d54a1da43f/ChangeLog (L9)

* gnu/packages/audio.scm (qjackctl)[arguments]: Remove "--disable-xunique"
from configure-flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-27 00:09:38 +01:00
Ricardo Wurmus
dd2f0cdba1
gnu: python-django-overextends: Use INVOKE. 
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
 2019-03-27 00:04:07 +01:00
Ricardo Wurmus
de6be02379
gnu: python-django-contact-form: Use INVOKE. 
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
 2019-03-27 00:03:31 +01:00
Ricardo Wurmus
7cdc7e579b
gnu: fritzing: Update to 0.9.3b. 
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
 2019-03-26 23:58:33 +01:00
Ricardo Wurmus
68631e037b
gnu: ldc: Use INVOKE. 
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus
4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE. 
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
 2019-03-26 23:13:54 +01:00