Commit graph

303 commits

Author SHA1 Message Date
Ricardo Wurmus
8bef9df4d4
gnu: r-annaffy: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.56.0.
2019-05-06 00:14:53 +02:00
Ricardo Wurmus
8265a1115e
gnu: r-mlinterfaces: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.0.
2019-05-06 00:14:53 +02:00
Ricardo Wurmus
1a3e33be23
gnu: r-clusterprofiler: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.12.0.
2019-05-06 00:14:53 +02:00
Ricardo Wurmus
77d28d665c
gnu: r-enrichplot: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.4.0.
2019-05-06 00:14:53 +02:00
Ricardo Wurmus
1990ff9d10
gnu: r-dose: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.0.
2019-05-06 00:14:53 +02:00
Ricardo Wurmus
ebffd24c10
gnu: r-fgsea: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:53 +02:00
Ricardo Wurmus
3e5ee6f69f
gnu: r-sigpathway: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.52.0.
2019-05-06 00:14:53 +02:00
Ricardo Wurmus
0a41b5db95
gnu: r-anota: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.32.0.
2019-05-06 00:14:52 +02:00
Ricardo Wurmus
24cf7bad99
gnu: r-gosemsim: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.10.0.
2019-05-06 00:14:52 +02:00
Ricardo Wurmus
376d1fe759
gnu: r-heatplus: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.30.0.
2019-05-06 00:14:52 +02:00
Ricardo Wurmus
c2effdedc0
gnu: r-varianttools: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.26.0.
2019-05-06 00:14:52 +02:00
Ricardo Wurmus
bc083ecab8
gnu: r-triform: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-triform): Update to 1.26.0.
2019-05-06 00:14:52 +02:00
Ricardo Wurmus
2ee91179d1
gnu: r-ioniser: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.8.0.
2019-05-06 00:14:52 +02:00
Ricardo Wurmus
48c2a7eb39
gnu: r-linnorm: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.8.0.
2019-05-06 00:14:52 +02:00
Ricardo Wurmus
5551b07cde
gnu: r-lumi: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.36.0.
2019-05-06 00:14:51 +02:00
Ricardo Wurmus
2986b51ffe
gnu: r-methylumi: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.30.0.
2019-05-06 00:14:51 +02:00
Ricardo Wurmus
8c0fae3cd4
gnu: r-minfi: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.30.0.
2019-05-06 00:14:51 +02:00
Ricardo Wurmus
693a98056c
gnu: r-bumphunter: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.26.0.
2019-05-06 00:14:51 +02:00
Ricardo Wurmus
409f4dd652
gnu: r-siggenes: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.58.0.
[propagated-inputs]: Add r-scrime.
2019-05-06 00:14:51 +02:00
Ricardo Wurmus
fadc6db82d
gnu: r-illuminaio: Update to 0.26.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.26.0.
2019-05-06 00:14:51 +02:00
Ricardo Wurmus
2d4430877a
gnu: r-geoquery: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.52.0.
2019-05-06 00:14:51 +02:00
Ricardo Wurmus
26c72fffc1
gnu: r-scone: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
Ricardo Wurmus
7baa59ed4d
gnu: r-scdd: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
Ricardo Wurmus
6a2c58b7e0
gnu: r-noiseq: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.28.0.
2019-05-06 00:14:50 +02:00
Ricardo Wurmus
78b6326785
gnu: r-monocle: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.12.0.
2019-05-06 00:14:50 +02:00
Ricardo Wurmus
a0ff725d6a
gnu: r-mast: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.10.0.
[propagated-inputs]: Add r-blme.
2019-05-06 00:14:50 +02:00
Ricardo Wurmus
3fd2ea8883
gnu: r-icobra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
Ricardo Wurmus
bcd8b7a9bd
gnu: r-ihw: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
Ricardo Wurmus
61c79d55e3
gnu: r-lpsymphony: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.12.0.
2019-05-06 00:14:49 +02:00
Ricardo Wurmus
4a3c47e940
gnu: r-ebseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
Ricardo Wurmus
301c4ff12a
gnu: r-deds: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-deds): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
Ricardo Wurmus
d5f3c0d09e
gnu: r-dnacopy: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
Ricardo Wurmus
d941918599
gnu: r-copynumber: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
Ricardo Wurmus
58a43fc28e
gnu: r-chipexoqual: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.8.0.
2019-05-06 00:14:49 +02:00
Ricardo Wurmus
8d3d0c3abe
gnu: r-savr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.22.0.
2019-05-06 00:14:49 +02:00
Ricardo Wurmus
0aa72f2d1e
gnu: r-destiny: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 2.14.0.
[propagated-inputs]: Remove r-fnn and r-hmisc; add r-ggplot2.
2019-05-06 00:14:48 +02:00
Ricardo Wurmus
6fc161fc3e
gnu: r-biocneighbors: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.2.0.
[propagated-inputs]: Add r-biocgenerics and r-rcpphnsw.
2019-05-06 00:14:48 +02:00
Ricardo Wurmus
d8771f5fd6
gnu: r-ruvseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.18.0.
2019-05-06 00:14:48 +02:00
Ricardo Wurmus
774e499cec
gnu: r-dnabarcodes: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
Ricardo Wurmus
3649d046a6
gnu: r-inspect: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
Ricardo Wurmus
5dce71535f
gnu: r-plgem: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.56.0.
2019-05-06 00:14:48 +02:00
Ricardo Wurmus
5bf7eb49f6
gnu: r-rots: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.12.0.
2019-05-06 00:14:48 +02:00
Ricardo Wurmus
07252952b7
gnu: r-glimma: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
40f0ee43a0
gnu: r-goseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.36.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
7a5d729af1
gnu: r-ctc: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.58.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
1236ce8e22
gnu: r-genomicinteractions: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
176a264c7c
gnu: r-interactionset: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
eff6b2eb12
gnu: r-riboseqr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
7d5acf7a25
gnu: r-riboprofiling: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
1ddd4af5a0
gnu: r-chipcomp: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
Ricardo Wurmus
c38de81594
gnu: r-bayseq: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.18.0.
2019-05-06 00:14:46 +02:00
Ricardo Wurmus
4f4bed7de5
gnu: r-qdnaseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.20.0.
2019-05-06 00:14:46 +02:00
Ricardo Wurmus
2317730994
gnu: r-cghcall: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.46.0.
2019-05-06 00:14:46 +02:00
Ricardo Wurmus
8efb842f11
gnu: r-cghbase: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.44.0.
2019-05-06 00:14:46 +02:00
Ricardo Wurmus
bcb95b7aac
gnu: r-marray: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
Ricardo Wurmus
a61bcb28f7
gnu: r-graph: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
Ricardo Wurmus
588b63c2af
gnu: r-multtest: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.40.0.
2019-05-06 00:14:45 +02:00
Ricardo Wurmus
0968a44874
gnu: r-ripseeker: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.24.0.
2019-05-06 00:14:45 +02:00
Ricardo Wurmus
4c221b3bbf
gnu: r-diffbind: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.12.0.
[propagated-inputs]: Add r-rhtslib; remove r-zlibbioc.
2019-05-06 00:14:45 +02:00
Ricardo Wurmus
e02162f7ba
gnu: r-qvalue: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.16.0.
2019-05-06 00:14:45 +02:00
Ricardo Wurmus
3e1bc88c1f
gnu: r-geneplotter: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.62.0.
2019-05-06 00:14:45 +02:00
Ricardo Wurmus
4b53d55e98
gnu: r-regioner: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.0.
2019-05-06 00:14:45 +02:00
Ricardo Wurmus
43a23a0733
gnu: r-hpar: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.26.0.
2019-05-06 00:14:44 +02:00
Ricardo Wurmus
0c53332a27
gnu: r-annotate: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.62.0.
2019-05-06 00:14:44 +02:00
Ricardo Wurmus
81a1c45df5
gnu: r-biocgenerics: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.30.0.
2019-05-06 00:14:44 +02:00
Ricardo Wurmus
fbf3494972
gnu: Add r-biocfilecache.
* gnu/packages/bioconductor.scm (r-biocfilecache): New variable.
2019-05-06 00:14:39 +02:00
Ricardo Wurmus
993912905d
gnu: Add r-biocsingular.
* gnu/packages/bioconductor.scm (r-biocsingular): New variable.
2019-05-06 00:14:28 +02:00
Tobias Geerinckx-Rice
9b19734c50
gnu: r-yamss: Fix typo in description.
* gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
2019-04-25 04:42:16 +02:00
Ricardo Wurmus
2da8588ebc
gnu: r-mlinterfaces: Update to 1.62.1.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.62.1.
2019-04-06 23:13:26 +02:00
Ricardo Wurmus
bb94f7257e
gnu: r-inspect: Update to 1.12.2.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.2.
2019-04-06 23:13:26 +02:00
Ricardo Wurmus
307586c1e3
gnu: Add r-arrmnormalization.
* gnu/packages/bioconductor.scm (r-arrmnormalization): New variable.
2019-04-03 17:42:18 +02:00
Ricardo Wurmus
b50c966087
gnu: Add r-arrmdata.
* gnu/packages/bioconductor.scm (r-arrmdata): New variable.
2019-04-03 17:42:18 +02:00
Ricardo Wurmus
5622628fd1
gnu: Add r-progeny.
* gnu/packages/bioconductor.scm (r-progeny): New variable.
2019-04-03 17:42:18 +02:00
Ricardo Wurmus
2bdc88fce7
gnu: Add r-rbowtie2.
* gnu/packages/bioconductor.scm (r-rbowtie2): New variable.
2019-04-03 17:42:18 +02:00
Ricardo Wurmus
9800d859a7
gnu: Add r-zfpkm.
* gnu/packages/bioconductor.scm (r-zfpkm): New variable.
2019-04-03 17:42:18 +02:00
Ricardo Wurmus
6b12f21363
gnu: Add r-webbioc.
* gnu/packages/bioconductor.scm (r-webbioc): New variable.
2019-04-03 17:42:18 +02:00
Ricardo Wurmus
7b5101c5bf
gnu: Add r-widgettools.
* gnu/packages/bioconductor.scm (r-widgettools): New variable.
2019-04-03 17:42:17 +02:00
Ricardo Wurmus
b9b8b447ec
gnu: Add r-wiggleplotr.
* gnu/packages/bioconductor.scm (r-wiggleplotr): New variable.
2019-04-03 17:42:17 +02:00
Ricardo Wurmus
8830664d61
gnu: Add r-wrench.
* gnu/packages/bioconductor.scm (r-wrench): New variable.
2019-04-03 17:42:17 +02:00
Ricardo Wurmus
ec12e53736
gnu: Add r-xcms.
* gnu/packages/bioconductor.scm (r-xcms): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus
c8310056f4
gnu: Add r-massspecwavelet.
* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus
50d9177051
gnu: Add r-xbseq.
* gnu/packages/bioconductor.scm (r-xbseq): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus
a6e1eb1a96
gnu: Add r-roar.
* gnu/packages/bioconductor.scm (r-roar): New variable.
2019-03-30 08:55:46 +01:00
Ricardo Wurmus
98a2af31a8
gnu: Add r-yarn.
* gnu/packages/bioconductor.scm (r-yarn): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
59cf26292f
gnu: Add r-quantro.
* gnu/packages/bioconductor.scm (r-quantro): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
f562c90aa8
gnu: Add r-yaqcaffy.
* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
4675b3cfa3
gnu: Add r-simpleaffy.
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
e99380d67b
gnu: Add r-gcrma.
* gnu/packages/bioconductor.scm (r-gcrma): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
303f2ed1c6
gnu: Add r-yapsa.
* gnu/packages/bioconductor.scm (r-yapsa): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
28098414d0
gnu: Add r-somaticsignatures.
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
398c4a9347
gnu: Add r-gtrellis.
* gnu/packages/bioconductor.scm (r-gtrellis): New variable.
2019-03-30 08:55:45 +01:00
Ricardo Wurmus
51e98f7e0f
gnu: Add r-yamss.
* gnu/packages/bioconductor.scm (r-yamss): New variable.
2019-03-29 19:28:11 +01:00
Ricardo Wurmus
5cfa4bff69
gnu: Add r-ebimage.
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
2019-03-29 19:28:03 +01:00
Ricardo Wurmus
ffe7029bab
gnu: Add r-aucell.
* gnu/packages/bioconductor.scm (r-aucell): New variable.
2019-03-29 18:10:46 +01:00
Ricardo Wurmus
f31e10f82e
gnu: Add r-allelicimbalance.
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
2019-03-29 18:07:17 +01:00
Ricardo Wurmus
adf7d8135b
gnu: Add r-annotationtools.
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
2019-03-29 18:05:45 +01:00
Ricardo Wurmus
0b91b7b969
gnu: Add r-annotationfuncs.
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
2019-03-29 17:49:54 +01:00
Ricardo Wurmus
9bf4bb19c9
gnu: Add r-abaenrichment.
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus
3972cfce6a
gnu: Add r-gofuncr.
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
2019-03-29 17:46:33 +01:00
Ricardo Wurmus
692bce1595
gnu: Add r-abadata.
* gnu/packages/bioconductor.scm (r-abadata): New variable.
2019-03-29 17:46:33 +01:00